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People

Name:
Niu Beifang
Gender:
Title:
Research Scientist & Professor
Post:
Deputy Director of Department of High Performance Computing Technology and Application Development
Dept:
Tel:
E-Mail:
bniu@sccas.cn
Edu:
B.S. in Computer Science, Shandong Aricultural University (2002) Ph.D. in Computer Software and Theory, University of Chinese Academy of Sciences (2009)
  • Resume:

    • 2015 - now, Professor-level Researcher, Computer Network Information Center of the CAS

    2012 - 2015, Research Scientist, McDonnell Genome Institute, Washington University in St. Louis, MO 63108, USA

    2009 - 2012, Postdoctoral Associate, The California Institute for Telecommunications and Information Technology (Calit2), University of California San Diego, CA 92093-0021, USA

  • Research Direction:
    • High-Performance Computing, Bioinformatics, Cancer Genomics
  • Projects Undertook:
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  • Social Service:
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  • Publication:
    • [1]. Mengyuan Liu, Yuting Hong, Xiaohong Duan , Qiming Zhou, Jing Chen, Siyao Liu, Junyan Su, Li Han, Jiali Zhang, Beifang Niu#. Unveiling the metal mutation nexus: Exploring the genomic impacts of heavy metal exposure in lung adenocarcinoma and colorectal cancer. (2023). Journal of Hazardous Materials, 461: 132590.
    [2]. Xinyin Han*, Shuying Zhang*, Daniel Cui Zhou, Dongliang Wang, Xiaoyu He, Danyang Yuan, Ruilin Li, Jiayin He, Xiaohong Duan, Michael C Wendl, Li Ding#, Beifang Niu#. (2021). MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data. Briefings in Bioinformatics, 22(5): bbaa402.
    [3]. Beifang Niu*, Adam D. Scott*, Sohini Sengupta*, Matthew H. Bailey, Prag Batra, Jie Ning, Matthew A. Wyczalkowski, Wen-Wei Liang, Qunyuan Zhang, Michael D. McLellan, Sam Q. Sun, Piyush Tripathi, Carolyn Lou, Kai Ye, Robert J. Mashl, John Wallis, Michael C. Wendl, Feng Chen#, Li Ding#. (2016). Protein-structure-guided discovery of functional mutations across 19 cancer types. Nature Genetics, 48(8): 827-837.
    [4]. Beifang Niu*, Kai Ye#*, Qunyuan Zhang, Charles Lu, Mingchao Xie, Michael D. McLellan, Michael C. Wendl and Li Ding#. (2014). MSIsensor: microsatellite instability detection using paired tu-mor-normal sequence data. Bioinformatics, 30(7):1015-6.
    [5]. The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium. (2020). Pan-cancer analysis of whole genomes. Nature, 578(7793): 82-93. (#Niu B was a member of PCAWG Consortium).